miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|162322379|gb|ES596068.1|ES596068 CTCCATCATCTCCGAAGCAAGGCGAAGAAGACGAAGGAAGACGACGATGATGGGCGCGTCCTTCGTCTCCACCGTCCCTT
CTCTGCTCCCGCTTCAAGCTCAAGTCGCTCCTCCTTCTTCTTCCACCTCGTCTTCCGCCGCCTCCGTCAGGCCCCCCGCC
GCTCGTCCCGTTGCGGTTCGCTGCAAGACGGAGAACGGCTTCGCCGATGGCGGCGAGGAGTTGAGCCGACGAGACGTTCT
TAAACTCGTCGGCGCTAGCGTCGGCATTGAACTGATGGCGAGCTCTGGATCATTCGTTGAATCGGCTCGTGCTGCTGATT
TGATTCAACGCCGGCAGCGTTCCGAGTTTCTTTCAAATGTCAGGGGCACCTTTTTCACGGCTATAAAGGGAAATCCAGAT
CTCATCCCATCTTTACTGACGTTGGCATTAAATGATGCTATGACTTATGACAAGGCCTCAAAGTCTGGAGGCCCAAATGG
ATCCATAAGGTTCAGCTCAGAGATTAGCAGACCCGAGAATAAGGGCCTTTCAGCTGCCATGAACTTATTGGAGGAAGCTA
AGAAGGAAATAGATTCATATTCCAAGGGCGGACCCATATCCTATGCAGATCTTATACAGTATGCAGCGCAGAGTGCACTC
AAGGCTACCTTTCTAGCTTCAGCCATTCGCAAATGTGGTGGGAATGAAGAGAAAGGGGGCTTGCTCTACACTGCCTATGG
TTCCAGCGGACAGTGGGGCTTGTTTGACA




Most similar to sp|Q9THX6|TL29_SOLLC

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9THX6|TL29_SOLLC Thylakoid lumenal 29 kDa protein,
           chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3
           SV=1
          Length = 345

 Score =  265 bits (676), Expect = 3e-70
 Identities = 131/178 (73%), Positives = 156/178 (87%)
 Frame = +2

Query: 215 EELSRRDVLKLVGASVGIELMASSGSFVESARAADLIQRRQRSEFLSNVRGTFFTAIKGN 394
           +   RRD+L+ VGA+VG++L+A S +F+E A AADLIQRRQRS+F S ++ T + AIK N
Sbjct: 46  DRFHRRDILQSVGAAVGMDLIARSSAFIEVANAADLIQRRQRSDFQSKIKLTLYDAIKAN 105

Query: 395 PDLIPSLLTLALNDAMTYDKASKSGGPNGSIRFSSEISRPENKGLSAAMNLLEEAKKEID 574
           PD+IPSLLTLALNDA+TYDKA+K+GGPNGSIRFSSEISRPENKGL AA+NLLEE+KK ID
Sbjct: 106 PDIIPSLLTLALNDAITYDKATKTGGPNGSIRFSSEISRPENKGLDAALNLLEESKKVID 165

Query: 575 SYSKGGPISYADLIQYAAQSALKATFLASAIRKCGGNEEKGGLLYTAYGSSGQWGLFD 748
             SKGGPISYADLIQ+AAQSA+K+TF+ASAI KCGGN EKG LLY+AYGS+GQWG FD
Sbjct: 166 LDSKGGPISYADLIQFAAQSAVKSTFIASAISKCGGNVEKGTLLYSAYGSNGQWGQFD 223